Structure-activity relationship of 6-methylidene penems bearing tricyclic heterocycles as broad-spectrum beta-lactamase inhibitors: crystallographic structures show unexpected binding of 1,4-thiazepine intermediates

J Med Chem. 2004 Dec 16;47(26):6556-68. doi: 10.1021/jm049680x.

Abstract

The design and synthesis of a series of seven tricyclic 6-methylidene penems as novel class A and C serine beta-lactamase inhibitors is described. These compounds proved to be very potent inhibitors of the TEM-1 and AmpC beta-lactamases and less so against the class B metallo-beta-lactamase CcrA. In combination with piperacillin, their in vitro activities enhanced susceptibility of all class C resistant strains from various bacteria. Crystallographic structures of a serine-bound reaction intermediate of 17 with the class A SHV-1 and class C GC1 enzymes have been established to resolutions of 2.0 and 1.4 A, respectively, and refined to R-factors equal 0.163 and 0.145. In both beta-lactamases, a seven-membered 1,4-thiazepine ring has formed. The stereogenic C7 atom in the ring has the R configuration in the SHV-1 intermediate and has both R and S configurations in the GC1 intermediate. Hydrophobic stacking interactions between the tricyclic C7 substituent and a tyrosine side chain, rather than electrostatic or hydrogen bonding by the C3 carboxylic acid group, dominate in both complexes. The formation of the 1,4- thiazepine ring structures is proposed based on a 7-endo-trig cyclization.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • Crystallography, X-Ray
  • Enterobacter cloacae / drug effects
  • Escherichia coli / drug effects
  • Heterocyclic Compounds, 2-Ring / chemical synthesis
  • Heterocyclic Compounds, 2-Ring / chemistry
  • Heterocyclic Compounds, 3-Ring / chemical synthesis
  • Heterocyclic Compounds, 3-Ring / chemistry*
  • Heterocyclic Compounds, 3-Ring / pharmacology
  • Hydrolysis
  • Klebsiella pneumoniae / drug effects
  • Microbial Sensitivity Tests
  • Models, Molecular
  • Protein Binding
  • Pseudomonas aeruginosa / drug effects
  • Serratia marcescens / drug effects
  • Staphylococcus aureus / drug effects
  • Structure-Activity Relationship
  • Thiazepines / chemical synthesis
  • Thiazepines / chemistry*
  • Thiazepines / pharmacology
  • beta-Lactamase Inhibitors*
  • beta-Lactamases / chemistry*
  • beta-Lactams / chemical synthesis
  • beta-Lactams / chemistry*
  • beta-Lactams / pharmacology

Substances

  • Heterocyclic Compounds, 2-Ring
  • Heterocyclic Compounds, 3-Ring
  • Thiazepines
  • beta-Lactamase Inhibitors
  • beta-Lactams
  • beta-lactamase PIT-2
  • beta-Lactamases